Afficher la couverture 'Swelfe: a detector of internal repeats in sequences and structures. | Abraham, Anne-Laure' en grand format
/5

0 avis

Swelfe: a detector of internal repeats in sequences and structures.

Archive ouverte

Abraham, Anne-Laure | Rocha, Eduardo P C | Pothier, Joël

Edité par CCSD ; Oxford University Press (OUP) -

International audience. Intragenic duplications of genetic material have important biological roles because of their protein sequence and structural consequences. We developed Swelfe to find internal repeats at three levels. Swelfe quickly identifies statistically significant internal repeats in DNA and amino acid sequences and in 3D structures using dynamic programming. The associated web server also shows the relationships between repeats at each level and facilitates visualization of the results. AVAILABILITY: http://bioserv.rpbs.jussieu.fr/swelfe. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Suggestions

Du même auteur

Characterisation and evolutionary analysis of intragenic repeats: a study in genes, protein sequences and three-dimensional structures of proteins. Caractérisation et analyse évolutive des répétitions intragéniques : une étude au niveau des gènes, des séquences protéiques et des structures tridimensionnelles

Archive ouverte | Abraham, Anne-Laure | CCSD

Duplications play a major role in protein evolution and result in intragenic repeats found in about 14% of protein sequences. We chose to study these repeats from an evolutionary point of view. For this, we developed a program, Sw...

Immobilier : l’érosion des côtes ne fait pas fuir les acheteurs, bien au contraire

Archive ouverte | Dachary-Bernard, Jeanne | CCSD

National audience. La maison les pieds dans l’eau et la vue imprenable du haut d’une falaise font toujours rêver les acquéreurs. S’ils sont conscients des risques liés au réchauffement climatique, beaucoup sont prêt...

Genomics of Streptococcus salivarius, a major human commensal

Archive ouverte | Delorme, Christine | CCSD

article in press. The salivarius group of streptococci is of particular importance for humans. This group consists of three genetically similar species, Streptococcus salivarius, Streptococcus vestibularis and Strep...

Chargement des enrichissements...