Circulating Tumor DNA Genomics Reveal Potential Mechanisms of Resistance to BRAF-Targeted Therapies in Patients with BRAF -Mutant Metastatic Non–Small Cell Lung Cancer

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Ortiz-Cuaran, Sandra | Mezquita, Laura | Swalduz, Aurélie | Aldea, Mihalea | Mazieres, Julien | Leonce, Camille | Jovelet, Cecile | Pradines, Anne | Avrillon, Virginie | Chumbi Flores, Washington | Lacroix, Ludovic | Loriot, Yohann | Westeel, Virginie | Ngo-Camus, Maud | Tissot, Claire | Raynaud, Christine | Gervais, Radj | Brain, Etienne | Monnet, Isabelle | Giroux Leprieur, Etienne | Caramella, Caroline | Mahier-Aït Oukhatar, Celine | Hoog-Labouret, Natalie | de Kievit, Frank | Howarth, Karen | Morris, Clive | Green, Emma | Friboulet, Luc | Chabaud, Sylvie | Guichou, Jean-François | Perol, Maurice | Besse, Benjamin | Blay, Jean-Yves | Saintigny, Pierre | Planchard, David

Edité par CCSD ; American Association for Cancer Research -

International audience. Abstract Purpose: The limited knowledge on the molecular profile of patients with BRAF-mutant non–small cell lung cancer (NSCLC) who progress under BRAF-targeted therapies (BRAF-TT) has hampered the development of subsequent therapeutic strategies for these patients. Here, we evaluated the clinical utility of circulating tumor DNA (ctDNA)-targeted sequencing to identify canonical BRAF mutations and genomic alterations potentially related to resistance to BRAF-TT, in a large cohort of patients with BRAF-mutant NSCLC. Experimental Design: This was a prospective study of 78 patients with advanced BRAF-mutant NSCLC, enrolled in 27 centers across France. Blood samples (n = 208) were collected from BRAF-TT–naïve patients (n = 47), patients nonprogressive under treatment (n = 115), or patients at disease progression (PD) to BRAF-TT (24/46 on BRAF monotherapy and 22/46 on BRAF/MEK combination therapy). ctDNA sequencing was performed using InVisionFirst-Lung. In silico structural modeling was used to predict the potential functional effect of the alterations found in ctDNA. Results: BRAFV600E ctDNA was detected in 74% of BRAF-TT–naïve patients, where alterations in genes related with the MAPK and PI3K pathways, signal transducers, and protein kinases were identified in 29% of the samples. ctDNA positivity at the first radiographic evaluation under treatment, as well as BRAF-mutant ctDNA positivity at PD were associated with poor survival. Potential drivers of resistance to either BRAF-TT monotherapy or BRAF/MEK combination were identified in 46% of patients and these included activating mutations in effectors of the MAPK and PI3K pathways, as well as alterations in U2AF1, IDH1, and CTNNB1. Conclusions: ctDNA sequencing is clinically relevant for the detection of BRAF-activating mutations and the identification of alterations potentially related to resistance to BRAF-TT in BRAF-mutant NSCLC.

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