Killer cell immunoglobulin–like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1

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Martin, Maureen | Naranbhai, Vivek | Shea, Patrick | Qi, Ying | Ramsuran, Veron | Vince, Nicolas | Gao, Xiaojiang | Thomas, Rasmi | Brumme, Zabrina | Carlson, Jonathan | Wolinsky, Steven | Goedert, James | Walker, Bruce | Segal, Florencia | Deeks, Steven | Haas, David | Migueles, Stephen | Connors, Mark | Michael, Nelson | Fellay, Jacques | Gostick, Emma | Llewellyn-Lacey, Sian | Price, David | Lafont, Bernard | Pymm, Phillip | Saunders, Philippa | Widjaja, Jacqueline | Wong, Shu Cheng | Vivian, Julian | Rossjohn, Jamie | Brooks, Andrew | Carrington, Mary

Edité par CCSD ; American Society for Clinical Investigation -

International audience. HLA-B*57 control of HIV involves enhanced CD8+ T cell responses against infected cells, but extensive heterogeneity exists in the level of HIV control among B*57+ individuals. Using whole-genome sequencing of untreated B*57+ HIV-1-infected controllers and noncontrollers, we identified a single variant (rs643347A/G) encoding an isoleucine-to-valine substitution at position 47 (I47V) of the inhibitory killer cell immunoglobulin-like receptor KIR3DL1 as the only significant modifier of B*57 protection. The association was replicated in an independent cohort and across multiple outcomes. The modifying effect of I47V was confined to B*57:01 and was not observed for the closely related B*57:03. Positions 2, 47, and 54 tracked one another nearly perfectly, and 2 KIR3DL1 allotypes differing only at these 3 positions showed significant differences in binding B*57:01 tetramers, whereas the protective allotype showed lower binding. Thus, variation in an immune NK cell receptor that binds B*57:01 modifies its protection. These data highlight the exquisite specificity of KIR-HLA interactions in human health and disease.

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