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Automated high speed 3D imaging of organoid cultures with efficient multi-scale phenotypic quantification

Archive ouverte | Beghin, Anne | CCSD

International audience. Current imaging approaches limit the ability to perform multiscale characterization of 3D organotypic cultures (organoids) in large numbers. Here, we present an automated multiscale 3D imagin...

3D Nuclei Segmentation by Combining GAN Based Image Synthesis and Existing 3D Manual Annotations

Archive ouverte | Galindo, Xareni | CCSD

International audience. Nuclei segmentation is an important task in cell analysis that requires accurate and reliable segmentation methods. In this context, deep learning based methods such as Stardist have emerged ...

A tessellation-based colocalization analysis approach for single-molecule localization microscopy

Archive ouverte | Levet, Florian | CCSD

International audience. Multicolor single-molecule localization microscopy (λSMLM) is a powerful technique to reveal the relative nanoscale organization and potential colocalization between different molecular speci...

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