De novo CLTC variants are associated with a variable phenotype from mild to severe intellectual disability, microcephaly, hypoplasia of the corpus callosum, and epilepsy

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Nabais Sa, Maria J. | Venselaar, Hanka | Wiel, Laurens | Trimouille, Aurelien | Lasseaux, Eulalie | Naudion, Sophie | Lacombe, Didier | Piton, Amélie | Vincent-Delorme, Catherine | Zweier, Christiane | Reis, André | Trollmann, Regina | Ruiz, Anna | Gabau, Elisabeth | Vetro, Annalisa | Guerrini, Renzo | Bakhtiari, Somayeh | Kruer, Michael C. | Amor, David J. | Cooper, Monica S. | Bijlsma, Emilia K. | Barakat, Tahsin Stefan | van Dooren, Marieke F. | van Slegtenhorst, Marjon | Pfundt, Rolph | Gilissen, Christian | Willemsen, Michèl A. | de Vries, Bert B. A. | de Brouwer, Arjan P. M. | Koolen, David A.

Edité par CCSD ; Nature Publishing Group -

PURPOSE: To delineate the genotype-phenotype correlation in individuals with likely pathogenic variants in the CLTC gene. METHODS: We describe 13 individuals with de novo CLTC variants. Causality of variants was determined by using the tolerance landscape of CLTC and computer-assisted molecular modeling where applicable. Phenotypic abnormalities observed in the individuals identified with missense and in-frame variants were compared with those with nonsense or frameshift variants in CLTC. RESULTS: All de novo variants were judged to be causal. Combining our data with that of 14 previously reported affected individuals (n = 27), all had intellectual disability (ID), ranging from mild to moderate/severe, with or without additional neurologic, behavioral, craniofacial, ophthalmologic, and gastrointestinal features. Microcephaly, hypoplasia of the corpus callosum, and epilepsy were more frequently observed in individuals with missense and in-frame variants than in those with nonsense and frameshift variants. However, this difference was not significant. CONCLUSIONS: The wide phenotypic variability associated with likely pathogenic CLTC variants seems to be associated with allelic heterogeneity. The detailed clinical characterization of a larger cohort of individuals with pathogenic CLTC variants is warranted to support the hypothesis that missense and in-frame variants exert a dominant-negative effect, whereas the nonsense and frameshift variants would result in haploinsufficiency.

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