Cross-species genomics reveals oncogenic dependencies in ZFTA/C11orf95 fusion-positive supratentorial ependymomas

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Zheng, Tuyu | Ghasemi, David | Okonechnikov, Konstantin | Korshunov, Andrey | Sill, Martin | Maass, Kendra | Benites Goncalves da Silva, Patricia | Ryzhova, Marina | Gojo, Johannes | Stichel, Damian | Arabzade, Amir | Kupp, Robert | Benzel, Julia | Taya, Shinichiro | Adachi, Toma | Shiraishi, Ryo | Gerber, Nicolas | Sturm, Dominik | Ecker, Jonas | Sievers, Philipp | Selt, Florian | Chapman, Rebecca | Haberler, Christine | Figarella‑branger, Dominique | Reifenberger, Guido | Fleischhack, Gudrun | Rutkowski, Stefan | Donson, Andrew | Ramaswamy, Vijay | Capper, David | Ellison, David | Herold-Mende, Christel | Schuller, Ulrich | Brandner, Sebastian | Hernaiz Driever, Pablo | Kros, Johan | Snuderl, Matija | Milde, Till | Grundy, Richard | Hoshino, Mikio | Mack, Stephen | Gilbertson, Richard | Jones, David T.W. | Kool, Marcel | von Deimling, Andreas | Pfister, Stefan | Sahm, Felix | Kawauchi, Daisuke | Pajtler, Kristian

Edité par CCSD ; American Association for Cancer Research -

International audience. Molecular groups of supratentorial ependymomas comprise tumors with ZFTA-RELA or YAP1-involving fusions and fusion-negative subependymoma. However, occasionally supratentorial ependymomas cannot be readily assigned to any of these groups due to lack of detection of a typical fusion and/or ambiguous DNA methylation-based classification. An unbiased approach with a cohort of unprecedented size revealed distinct methylation clusters composed of tumors with ependymal but also various other histological features containing alternative translocations that shared ZFTA as a partner gene. Somatic overexpression of ZFTA-associated fusion genes in the developing cerebral cortex is capable of inducing tumor formation in vivo, and cross-species comparative analyses identified GLI2 as a key downstream regulator of tumorigenesis in all tumors. Targeting GLI2 with arsenic trioxide caused extended survival of tumor-bearing animals, indicating a potential therapeutic vulnerability in ZFTA fusion-positive tumors.

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