Radiation damage and dose limits in serial synchrotron crystallography at cryo- and room temperatures

Archive ouverte

de La Mora, Eugenio | Coquelle, Nicolas | Bury, Charles | Rosenthal, Martin | Holton, James | Carmichael, Ian | Garman, Elspeth | Burghammer, Manfred | Colletier, Jacques-Philippe | Weik, Martin

Edité par CCSD ; National Academy of Sciences -

International audience. Radiation damage limits the accuracy of macromolecular structures in X-ray crystallography. Cryogenic (cryo-) cooling reduces the global radiation damage rate and, therefore, became the method of choice over the past decades. The recent advent of serial crystallography, which spreads the absorbed energy over many crystals, thereby reducing damage, has rendered room temperature (RT) data collection more practical and also extendable to microcrystals, both enabling and requiring the study of specific and global radiation damage at RT. Here, we performed sequential serial raster-scanning crystallography using a microfocused synchrotron beam that allowed for the collection of two series of 40 and 90 full datasets at 2-and 1.9-Å resolution at a dose rate of 40.3 MGy/s on hen egg white lysozyme (HEWL) crystals at RT and cryotemperature, respectively. The diffraction intensity halved its initial value at average doses (D 1/2) of 0.57 and 15.3 MGy at RT and 100 K, respectively. Specific radiation damage at RT was observed at disulfide bonds but not at acidic residues, increasing and then apparently reversing, a peculiar behavior that can be modeled by accounting for differential diffraction intensity decay due to the nonuniform illumination by the X-ray beam. Specific damage to disulfide bonds is evident early on at RT and proceeds at a fivefold higher rate than global damage. The decay modeling suggests it is advisable not to exceed a dose of 0.38 MGy per dataset in static and time-resolved synchrotron crystallography experiments at RT. This rough yardstick might change for proteins other than HEWL and at resolutions other than 2 Å. X-ray radiation damage | serial crystallography | room temperature synchrotron data collection

Suggestions

Du même auteur

Defective Guanine Nucleotide Exchange in the Elongation Factor-like 1 (EFL1) GTPase by Mutations in the Shwachman-Diamond Syndrome Protein.

Archive ouverte | García-Márquez, Adrián | CCSD

International audience. Ribosome biogenesis is orchestrated by the action of several accessory factors that provide time and directionality to the process. One such accessory factor is the GTPase EFL1 involved in th...

SdsA polymorph isolation and improvement of their crystal quality using nonconventional crystallization techniques

Archive ouverte | de La Mora, Eugenio | CCSD

International audience

Photochemical Mechanism of an Atypical Algal Phytochrome

Archive ouverte | Choudry, Uzma | CCSD

International audience. Phytochromes are bilin-containing photoreceptors that are typically sensitive to the red/far-red region of the visible spectrum. Recently, phytochromes from certain eukaryotic algae have beco...

Chargement des enrichissements...