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Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.

Archive ouverte | Sreedharan, Vipin T | CCSD

International audience. : We present Oqtans, an open-source workbench for quantitative transcriptome analysis, that is integrated in Galaxy. Its distinguishing features include customizable computational workflows a...

Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

Archive ouverte | Gan, Xiangchao | CCSD

International audience. Genetic differences between Arabidopsis thaliana accessions underlie the plant's extensive phenotypic variation, and until now these have been interpreted largely in the context of the annota...

Assessment of transcript reconstruction methods for RNA-seq.

Archive ouverte | Steijger, Tamara | CCSD

LINA-COMBI. International audience. We evaluated 25 protocol variants of 14 independent computational methods for exon identification, transcript reconstruction and expression-level quantification from RNA-seq data....

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