Afficher la couverture 'GOToolBox: functional analysis of gene datasets based on Gene Ontology. | Martin, David' en grand format
/5

0 avis

GOToolBox: functional analysis of gene datasets based on Gene Ontology.

Archive ouverte

Martin, David | Brun, C. | Remy, Elisabeth | Mouren, Pierre | Jacq, Bernard | Thieffry, Denis

Edité par CCSD ; BioMed Central -

We have developed methods and tools based on the Gene Ontology (GO) resource allowing the identification of statistically over-or under-represented terms in a gene dataset; the clustering of functionally related genes within a set; and the retrieval of genes sharing annotations with a query gene. GO annotations can also be constrained to a slim hierarchy or a given level of the ontology. The source codes are available upon request, and distributed under the GPL license.

Suggestions

Du même auteur

GOToolBox: functional analysis of gene datasets based on Gene Ontology.

Archive ouverte | Martin, David | CCSD

We have developed methods and tools based on the Gene Ontology (GO) resource allowing the identification of statistically over- or under-represented terms in a gene dataset; the clustering of functionally related genes within a se...

Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework

Archive ouverte | Remy, Elisabeth | CCSD

International audience. To each Boolean function f : {0, 1}^n → {0, 1}^n and each x ∈ {0, 1}^n, we associate a signed directed graph G(x), and we show that the existence of a positive circuit in G(x) for some x is a...

Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer

Archive ouverte | Cantini, Laura | CCSD

International audience. High-dimensional multi-omics data are now standard in biology. They can greatly enhance our understanding of biological systems when effectively integrated. To achieve proper integration, joi...

Chargement des enrichissements...