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Modeling local repeats on genomic sequences

Archive ouverte | Nicolas, Jacques | CCSD

This paper deals with the specification and search of repeats of biological interest, i.e. repeats that may have a role in genomic structures or functions. Although some particular repeats such as tandem repeats have been well for...

Domain organization within repeated DNA sequences: application to the study of a family of transposable elements.

Archive ouverte | Tempel, Sébastien | CCSD

DomainOrganizer web page is available at www.irisa.fr/symbiose/DomainOrganizer/. Motivation: The analysis of repeated elements in genomes is a fascinating domain of research that is lacking relevant tools for transp...

Browsing repeats in genomes : Pygram and an application to non-coding region analysis.

Archive ouverte | Durand, Patrick | CCSD

Background: A large number of studies on genome sequences have revealed the major role played by repeated sequences in the structure, function, dynamics and evolution of genomes. Indepth repeat analysis requires specialized method...

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