Single cell profiling of circulating autoreactive CD4 T cells from patients with autoimmune liver diseases suggests tissue imprinting

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Cardon, Anaïs | Guinebretière, Thomas | Dong, Chuang | Gil, Laurine | Ado, Sakina | Gavlovsky, Pierre-Jean | Braud, Martin | Danger, Richard | Schultheiß, Christoph | Doméné, Aurélie | Paul-Gilloteaux, Perrine | Chevalier, Caroline | Bernier, Laura | Judor, Jean-Paul | Fourgeux, Cynthia | Imbert, Astrid | Khaldi, Marion | Bardou-Jacquet, Edouard | Elkrief, Laure | Lannes, Adrien | Silvain, Christine | Schnee, Matthieu | Tanne, Florence | Vavasseur, Fabienne | Brusselle, Lucas | Brouard, Sophie | Kwok, William, W | Mosnier, Jean François | Lohse, Ansgar | Poschmann, Jeremie | Binder, Mascha | Gournay, Jérôme | Conchon, Sophie | Milpied, Pierre | Renand, Amédée

Edité par CCSD ; Nature Publishing Group -

International audience. Autoimmune liver diseases (AILD) involve dysregulated CD4 T cell responses against liver self-antigens, but how these autoreactive T cells relate to liver tissue pathology remains unclear. Here we perform single-cell transcriptomic and T cell receptor analyses of circulating, self-antigen-specific CD4 T cells from patients with AILD and identify a subset of liver-autoreactive CD4 T cells with a distinct B-helper transcriptional profile characterized by PD-1, TIGIT and HLA-DR expression. These cells share clonal relationships with expanded intrahepatic T cells and exhibit transcriptional signatures overlapping with tissue-resident T cells in chronically inflamed environments. Using a mouse model, we demonstrate that, following antigen recognition in the liver, CD4 T cells acquire an exhausted phenotype, play a crucial role in liver damage, and are controlled by immune checkpoint pathways. Our findings thus suggest that circulating autoreactive CD4 T cells in AILD are imprinted by chronic antigen exposure to promote liver inflammation, thereby serving as a potential target for developing biomarkers and therapies for AILD.

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