Elucidating the Activation Mechanism of AMPK by Direct Pan-Activator PF-739

Archive ouverte

Aledavood, Elnaz | Gheeraert, Aria | Forte, Alessia | Vuillon, Laurent | Rivalta, Ivan | Luque, F. Javier | Estarellas, Carolina

Edité par CCSD ; Frontiers Media -

International audience. Adenosine monophosphate-activated protein kinase (AMPK) is a key energy sensor regulating the cell metabolism in response to energy supply and demand. The evolutionary adaptation of AMPK to different tissues is accomplished through the expression of distinct isoforms that can form up to 12 heterotrimeric complexes, which exhibit notable differences in the sensitivity to direct activators. To comprehend the molecular factors of the activation mechanism of AMPK, we have assessed the changes in the structural and dynamical properties of β1- and β2-containing AMPK complexes formed upon binding to the pan-activator PF-739. The analysis revealed the molecular basis of the PF-739-mediated activation of AMPK and enabled us to identify distinctive features that may justify the slightly higher affinity towards the β1−isoform, such as the β1−Asn111 to β2−Asp111 substitution, which seems to be critical for modulating the dynamical sensitivity of β1- and β2 isoforms. The results are valuable in the design of selective activators to improve the tissue specificity of therapeutic treatment.

Suggestions

Du même auteur

Exploring Allosteric Pathways of a V-Type Enzyme with Dynamical Perturbation Networks

Archive ouverte | Gheeraert, Aria | CCSD

International audience. Elucidation of the allosteric pathways in proteins is a computational challenge that strongly benefits from combination of atomistic molecular dynamics (MD) simulations and coarse-grained ana...

Subtle Changes at the RBD/hACE2 Interface During SARS-CoV-2 Variant Evolution: A Molecular Dynamics Study

Archive ouverte | Gheeraert, Aria | CCSD

International audience. The SARS-CoV-2 Omicron variants show different behavior compared to the previous variants, especially with respect to the Delta variant, which promotes a lower morbidity despite being much mo...

Connected Component Analysis of Dynamical Perturbation Contact Networks

Archive ouverte | Gheeraert, Aria | CCSD

International audience. Describing protein dynamical networks through amino acid contacts is a powerful way to analyze complex biomolecular systems. However, due to the size of the systems, identifying the relevant ...

Chargement des enrichissements...