Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake

Archive ouverte

Schnepf, Andrea | Black, Christopher, K | Couvreur, Valentin | Delory, Benjamin, M | Doussan, Claude | Heymans, Adrien | Javaux, Mathieu | Khare, Deepanshu | Koch, Axelle | Koch, Timo | Kuppe, Christian, W | Landl, Magdalena | Leitner, Daniel | Lobet, Guillaume | Meunier, Félicien | Postma, Johannes, A | Schäfer, Ernst, D | Selzner, Tobias | Vanderborght, Jan | Vereecken, Harry

Edité par CCSD ; Oxford Academic -

International audience. Functional-structural root architecture models have evolved as tools for the design of improved agricultural management practices and for the selection of optimal root traits. In order to test their accuracy and reliability, we present the first benchmarking of root water uptake from soil using five well-established functional-structural root architecture models: DuMux, CPlantBox, R-SWMS, OpenSimRoot and SRI. The benchmark scenarios include basic tests for water flow in soil and roots as well as advanced tests for the coupled soil-root system. The reference solutions and the solutions of the different simulators are available through Jupyter Notebooks on a GitHub repository. All of the simulators were able to pass the basic tests and continued to perform well in the benchmarks for the coupled soil-plant system. For the advanced tests, we created an overview of the different ways of coupling the soil and the root domains as well as the different methods used to account for rhizosphere resistance to water flow. Although the methods used for coupling and modelling rhizosphere resistance were quite different, all simulators were in reasonably good agreement with the reference solution. During this benchmarking effort, individual simulators were able to learn about their strengths and challenges, while some were even able to improve their code. Some now include the benchmarks as standard tests within their codes. Additional model results may be added to the GitHub repository at any point in the future and will be automatically included in the comparison.

Suggestions

Du même auteur

Call for participation: Collaborative benchmarking of functional-structural root architecture models. The case of root water uptake

Archive ouverte | Schnepf, Andrea | CCSD

Three-dimensional models of root growth, architecture and function are becoming important tools that aid the design of agricultural management schemes and the selection of beneficial root traits. However, while benchmarking is com...

Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake

Archive ouverte | Schnepf, Andrea | CCSD

International audience. Three-dimensional models of root growth, architecture and function are becoming important tools that aid the design of agricultural management schemes and the selection of beneficial root tra...

Loïc Pagès, founding scientist in root ecology and modelling

Archive ouverte | Barczi, Jean-François | CCSD

International audience

Chargement des enrichissements...