Aozan: an automated post-sequencing data-processing pipeline

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Aozan: an automated post-sequencing data-processing pipeline

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Perrin, Sandrine | Firmo, Cyril | Lemoine, Sophie | Le Crom, Stéphane | Jourdren, Laurent

Edité par CCSD ; Oxford University Press (OUP) -

International audience. Motivation: Data management and quality control of output from Illumina sequencers is a disk space- and time-consuming task. Thus, we developed Aozan to automatically handle data transfer, demultiplexing, conversion and quality control once a run has finished. This software greatly improves run data management and the monitoring of run statistics via automatic emails and HTML web reports.Availability and Implementation: Aozan is implemented in Java and Python, supported on Linux systems, and distributed under the GPLv3 License at: http://www.outils.genomique.biologie.ens.fr/aozan/. Aozan source code is available on GitHub: https://github.com/GenomicParisCentre/aozan.

Langue: en

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