A recurrent COL6A1 pseudoexon insertion causes muscular dystrophy and is effectively targeted by splice-correction therapies

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Bolduc, Véronique | Foley, A. Reghan, Reghan | Solomon-Degefa, Herimela | Sarathy, Apurva | Donkervoort, Sandra | Hu, Ying | Chen, Grace, S | Sizov, Katherine | Nalls, Matthew | Zhou, Haiyan | Aguti, Sara | Cummings, Beryl, B | Lek, Monkol | Tukiainen, Taru | Marshall, Jamie, L | Regev, Oded | Marek-Yagel, Dina | Sarkozy, Anna | Butterfield, Russell, J | Jou, Cristina | Jimenez-Mallebrera, Cecilia | Li, Yan | Gartioux, Corine | Mamchaoui, Kamel | Allamand, Valérie | Gualandi, Francesca | Ferlini, Alessandra | Hanssen, Eric | Wilton, Steve, D | Lamandé, Shireen, R | Macarthur, Daniel, G | Wagener, Raimund | Muntoni, Francesco | Bönnemann, Carsten, G

Edité par CCSD ; American Society for Clinical Investigation -

International audience. The clinical application of advanced next-generation sequencing technologies is increasingly uncovering novel classes of mutations that may serve as potential targets for precision medicine therapeutics. Here, we show that a deep intronic splice defect in the COL6A1 gene, originally discovered by applying muscle RNA sequencing in patients with clinical findings of collagen VI-related dystrophy (COL6-RD), inserts an in-frame pseudoexon into COL6A1 mRNA, encodes a mutant collagen a1(VI) protein that exerts a dominant-negative effect on collagen VI matrix assembly, and provides a unique opportunity for splice-correction approaches aimed at restoring normal gene expression. Using splicemodulating antisense oligomers, we efficiently skipped the pseudoexon in patient-derived fibroblast cultures and restored a wild-type matrix. Similarly, we used CRISPR/Cas9 to precisely delete an intronic sequence containing the pseudoexon and efficiently abolish its inclusion while preserving wild-type splicing. Considering that this splice defect is emerging as one of the single most frequent mutations in COL6-RD, the design of specific and effective splice-correction therapies offers a promising path for clinical translation.

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