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From hosts to symbionts: integrated gene prediction for prokaryotic genomes using EuGene

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Sallet, Erika | Gouzy, Jerome | Roux, Brice | Capela, Delphine | Sauviac, Laurent | Bruand, Claude | Gamas, Pascal | Schiex, Thomas

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International audience. With the advent of new generation sequencing, the annotation of new prokaryotic (symbiont) genomic sequences increasingly occurs in a data-rich context, including a variety of libraries of short reads of transcriptomic sequences. This creates new opportunities in annotation. In this talk, I will introduce the new prokaryotic variant of the integrative gene prediction software EuGene used for plan annotation. By leveraging RNA-Seq data, EuGene becomes capable of predicting new functional structures, including untranslated transcribed regions such as non protein coding RNA genes.

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