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Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees

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Chaves, Camila L. | Blanc-Jolivet, Celine | Sebbenn, Alexandre M. | Mader, Malte | Meyer-Sand, Barbara R. V. | Paredes-Villanueva, Kathelyn | Honorio Coronado, Eurídice N. | García-Dávila, Carmen R. | Tysklind, Niklas | Troispoux, Valérie | Massot, Marie | Degen, Bernd

Edité par CCSD ; Springer -

International audience. We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed.

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