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Sequanix: a dynamic graphical interface for Snakemake workflows

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Desvillechabrol, Dimitri | Legendre, Rachel | Rioualen, Claire | Bouchier, Christiane | van Helden, Jacques | Kennedy, Sean | Cokelaer, Thomas

Edité par CCSD ; Oxford University Press (OUP) -

International audience. We designed a PyQt graphical user interface-Sequanix-aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users.

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