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Origin, evolution and global spread of SARS-CoV-2. Origine, évolution et propagation mondiale du SARS-CoV-2

Archive ouverte | Zhukova, Anna | CCSD

International audience. SARS-CoV-2 is the virus responsible for the global COVID19 pandemic. We review what is known about the origin of this virus, detected in China at the end of December 2019. The genome of this ...

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

Archive ouverte | Lemoine, Frédéric | CCSD

International audience. MotivationThe first cases of the COVID-19 pandemic emerged in December 2019. Until the end of February 2020, the number of available genomes was below 1,000, and their multiple alignment was ...

Cuban history of CRF19 recombinant subtype of HIV-1

Archive ouverte | Zhukova, Anna | CCSD

International audience. CRF19 is a recombinant form of HIV-1 subtypes D, A1 and G, which was first sampled in Cuba in 1999, but was already present there in 1980s. CRF19 was reported almost uniquely in Cuba, where i...

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