SAS profile correlations reveal SAS hierarchical nature and information content

Archive ouverte

Spill, Yannick G. | Nilges, Michael

Edité par CCSD ; Public Library of Science -

International audience. In structural biology, Small-Angle Scattering experiments (SAS) are unique, because although they provide low resolution data, they can be performed in closer-to-native conditions than those arising in X-Ray crystallography. A number of questions on SAS, however, remain unsolved, particularly in the light of modelling ensembles of conformers in solution. In this article, we study the ensemble average and covariance of SAS profiles analytically. Using this ensemble covariance, we demonstrate the hierarchical nature of SAS profiles. Furthermore, we show that the information content is not uniform and reaches its maximum in the intermediate q range. The arguments are generalized using microsecond-scale molecular dynamics trajectories of the lysozyme and on an ensemble of the intrinsically disordered protein p15PAF. We show that for highly flexible systems, the SAS profile is a representation of the ensemble of conformers in solution, and not that of one conformer in particular.

Suggestions

Du même auteur

Automatic Bayesian Weighting for SAXS Data

Archive ouverte | Spill, Yannick, G | CCSD

International audience. Small-angle X-ray scattering (SAXS) experiments are important in structural biology because they are solution methods, and do not require crystallization of protein complexes. Structure deter...

SAXS Merge : an automated statistical method to merge SAXS profiles using Gaussian processes

Archive ouverte | Spill, Yannick G. | CCSD

International audience. Small-angle X-ray scattering (SAXS) is an experimental technique that allows structural information on biomolecules in solution to be gathered. High-quality SAXS profiles have typically been ...

ModBase, a database of annotated comparative protein structure models and associated resources

Archive ouverte | Pieper, Ursula | CCSD

International audience. ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an auto- mated modeling pipeline that relies primar...

Chargement des enrichissements...