Single-cell RNA seq-derived signatures define response patterns to atezolizumab + bevacizumab in advanced hepatocellular carcinoma

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Cappuyns, Sarah | Piqué-Gili, Marta | Esteban-Fabró, Roger | Philips, Gino | Balaseviciute, Ugne | Pinyol, Roser | Gris-Oliver, Albert | Vandecaveye, Vincent | Abril-Fornaguera, Jordi | Montironi, Carla | Bassaganyas, Laia | Peix, Judit | Zeitlhoefler, Marcus | Mesropian, Agavni | Huguet-Pradell, Júlia | Haber, Philipp, K | Figueiredo, Igor | Ioannou, Giorgio | Gonzalez-Kozlova, Edgar | D’alessio, Antonio | Mohr, Raphael | Meyer, Tim | Lachenmayer, Anja | Marquardt, Jens, U | Reeves, Helen, L | Edeline, Julien | Finkelmeier, Fabian | Trojan, Jörg | Galle, Peter, R | Foerster, Friedrich | Mínguez, Beatriz | Montal, Robert | Gnjatic, Sacha | Pinato, David, J | Heikenwalder, Mathias | Verslype, Chris | van Cutsem, Eric | Lambrechts, Diether | Villanueva, Augusto | Dekervel, Jeroen | Llovet, Josep, M

Edité par CCSD ; Elsevier -

International audience. Background & aims: The combination of atezolizumab and bevacizumab (atezo+bev) is the current standard of care for advanced hepatocellular carcinoma (HCC), providing a median overall survival (OS) of 19.2 months. Here, we aim to uncover the underlying cellular processes driving clinical benefit versus resistance to atezo+bev.Methods: We harnessed the power of single-cell RNA sequencing in advanced HCC to derive gene expression signatures recapitulating 21 cell phenotypes. These signatures were applied to 422 RNA-sequencing samples of advanced HCC patients treated with atezo+bev (n=317) versus atezolizumab (n=47) or sorafenib (n=58) as comparators.Results: We unveiled two distinct patterns of response to atezo+bev. First, an immune-mediated response characterized by the combined presence of CD8+ T effector cells and pro-inflammatory CXCL10+ macrophages, representing an immune rich microenvironment. Second, a non-immune, angiogenesis-related response distinguishable by a reduced expression of the VEGF co-receptor neuropilin-1 (NRP1), a biomarker that specifically predicts improved OS upon atezo+bev vs sorafenib (p = 0.039). Primary resistance was associated with an enrichment of immunosuppressive myeloid populations, namely CD14+ monocytes and TREM2+ macrophages, and Notch pathway activation. Based on these mechanistic insights we define "Immune-competent" and "Angiogenesis-driven" molecular subgroups, each associated with a significantly longer OS with atezo+bev versus sorafenib (p of interaction = 0.027), and a "Resistant" subset.Conclusion: Our study unveils two distinct molecular subsets of clinical benefit to atezolizumab plus bevacizumab in advanced HCC ("Immune-competent" and "Angiogenesis-driven") as well as the main traits of primary resistance to this therapy, thus providing a molecular framework to stratify patients based on clinical outcome and guiding potential strategies to overcome resistance.

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