microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data

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Nasr, Engy | Amato, Pierre | Bhardwaj, Anshu | Blankenberg, Daniel | Brites, Daniela | Cumbo, Fabio | Do, Katherine | Ferrari, Emanuele | Griffin, Timothy, J | Gruening, Bjoern | Hiltemann, Saskia | Jagtap, Pratik | Mehta, Subina | Métris, Kimberly, L | Momin, Saim | Oba, Asime | Pavloudi, Christina | Pechlivanis, Nikos | Péguilhan, Raphaëlle | Psomopoulos, Fotis | Rosic, Nedeljka | Schatz, Michael, C | Schiml, Valerie, Claudia | Siguret, Clea | Soranzo, Nicola | Stubbs, Andrew | van Heusden, Peter | Vohra, Mustafa | Zierep, Paul | Batut, Bérénice

Edité par CCSD -

Microbial research generates vast and complex data from diverse omics technologies, necessitating innovative analytical solutions. microGalaxy (Galaxy for Microbiology) addresses these needs with a user-friendly platform that integrates 220+ tool suites and 65+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on the main EU Galaxy server (microgalaxy.usegalaxy.eu), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 45+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, microGalaxy prioritizes tool testing, semi-automatic updates, and multi-omics integration to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, microGalaxy provides scalable resources for researchers at all expertise levels, enabling them to tackle challenges in microbial data analysis with confidence and efficiency.

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