Community-Driven Data Analysis Training for Biology

Archive ouverte

Batut, Bérénice | Hiltemann, Saskia | Bagnacani, Andrea | Baker, Dannon | Bhardwaj, Vivek | Blank, Clemens | Bretaudeau, Anthony | Brillet-Guéguen, Loraine | Čech, Martin | Chilton, John | Clements, Dave | Doppelt-Azeroual, Olivia | Erxleben, Anika | Freeberg, Mallory Ann | Gladman, Simon | Hoogstrate, Youri | Hotz, Hans-Rudolf | Houwaart, Torsten | Jagtap, Pratik | Larivière, Delphine | Le Corguillé, Gildas | Manke, Thomas | Mareuil, Fabien | Ramírez, Fidel | Ryan, Devon | Sigloch, Florian Christoph | Soranzo, Nicola | Wolff, Joachim | Videm, Pavankumar | Wolfien, Markus | Wubuli, Aisanjiang | Yusuf, Dilmurat | Taylor, James | Backofen, Rolf | Nekrutenko, Anton | Grüning, Björn

Edité par CCSD ; Elsevier -

International audience. The primary problem with the explosion of biomedical datasets is not the data, not computational resources, and not the required storage space, but the general lack of trained and skilled researchers to manipulate and analyze these data. Eliminating this problem requires development of comprehensive educational resources. Here we present a community-driven framework that enables modern, interactive teaching of data analytics in life sciences and facilitates the development of training materials. The key feature of our system is that it is not a static but a continuously improved collection of tutorials. By coupling tutorials with a web-based analysis framework, biomedical researchers can learn by performing computation themselves through a web browser without the need to install software or search for example datasets. Our ultimate goal is to expand the breadth of training materials to include fundamental statistical and data science topics and to precipitate a complete re-engineering of undergraduate and graduate curricula in life sciences. This project is accessible at https://training.galaxyproject.org.

Consulter en ligne

Suggestions

Du même auteur

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Archive ouverte | Afgan, Enis | CCSD

International audience. Abstract Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A...

Galaxy Training: A powerful framework for teaching!

Archive ouverte | Hiltemann, Saskia | CCSD

International audience. Abstract There is an ongoing explosion of scientific datasets being generated, brought on by recent technological advances in many areas of the natural sciences. As a result, the life science...

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

Archive ouverte | Tekman, Mehmet | CCSD

International audience. Background: The vast ecosystem of single-cell RNA-sequencing tools has until recently been plagued by an excess of diverging analysis strategies, inconsistent file formats, and compatibility ...

Chargement des enrichissements...