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AFLPdiv

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Petit R.J., Remy, Petit

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Année de la première version : 2005. It computes comparable measures of diversity (allelic richness and % polymorphic loci) from AFLP data. The source file should be an ASCII file (its name should have 8 characters maximum: 12345678.txt) and should include the following information : - First line : Number of AFLP loci (=polymorphic band) Number of populations Rarefaction sample size (equal or lower than the smallest population sample size) - Second line : Population sample sizes - Subsequent lines : Locus 1: Number of [+] genotypes in pop 1, 2... Locus 2: Number of [+] genotypes in pop 1, 2... ...

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Rarefac

Archive ouverte | Petit R.J., Remy, Petit | CCSD

Année de la première version : 2003. This programme (RAREFAC) is written in Turbo-Pascal and relates to the following paper : Petit, El Mousadik & Pons. 1998. Identifying populations for conservation on the basis of...

DistoN

Archive ouverte | Petit R.J., Remy, Petit | CCSD

Année de la première version : 2003. This TURBO PASCAL program DistoN yields pairwise estimates of diversity that can be used to measure Gst or Nst as a function of distance. These measures are based on haploid popu...

Contrib

Archive ouverte | Petit R.J., Remy, Petit | CCSD

Année de la première version : 1999. This program provides a measure of the contribution of each population to total diversity (measured by H, the expected heterozygosity, or by R, the allelic richness). This contri...

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